20种m6A甲基化调节因子和甲状腺乳头状癌的相关性分析
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首都医科大学北京朝阳医院耳鼻咽喉头颈外科

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Bio-informatic analysis of the role of 20 m6A methylation regulators in the papillary thyroid cancer
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Department of Otorhinolaryngology,Head and Neck Surgery,Beijing Chaoyang Hospital,Capital Medical University

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    目的:分析20种m6A甲基化调节基因在甲状腺乳头状癌(PTC)中的发生、发展和预后中的作用。 方法:从TCGA数据集中获取395例PTC患者的数据,其中包括59例癌旁组织数据。比较20个m6A甲基化调节因子在PTC组织与癌旁组织之间的差异表达及其与PTC患者临床数据(性别、T分期、颈淋巴结转移等)之间的相关性。筛选预后相关的m6A调节基因,使用LASSO算法建立PTC患者预后预测模型。分析预后相关m6A调节基因与肿瘤免疫浸润之间的关系。所有统计分析均由R语言软件完成。以P<0.05为差异具有统计学意义。 结果:共15种m6A调节基因在PTC中表达上调,3种表达下调。HNRNPC与IGF2BP2及ALKBH5的表达与PTC淋巴结转移呈负相关。HNRNPC和IGF2BP2的表达与PTC的T分期相关。YTHDF1的表达与性别相关。METTL14、YTHDC1、YTHDF2和HNRNPA2B1的表达与PTC的临床分期相关。FTO、IGF2BP1和YTHDF3与PTC患者预后相关,由此建立的预后预测模型预测PTC患者3年和5年生存率的ROC曲线下面积为分别为0.753(置信区间0.615-0.891),和0.729(置信区间0.613-0.846)。YTHDF3与内皮细胞、巨噬细胞、NK细胞和CD4+T细胞在肿瘤中的浸润相关;FTO与巨噬细胞、NK细胞、CD4+T细胞和CD8+T细胞相关。 结论:m6A甲基化调节基因在PTC的发生发展及预后中起重要作用,可能是PTC治疗的潜在生物标志物。

    Abstract:

    Objective:?To explore the role of the 20 m6A methylation regulators in the occurrence, development, and prognosis of papillary thyroid cancer (PTC). Methods:?A total of 395 cases of papillary thyroid carcinoma (PTC) data were obtained from the TCGA dataset. The differentiated expressed of the 20 m6A regulators were compared, and the correlation between the clinical data of PTC (gender, T stage, cervical lymph node metastasis, etc.) was analyzed. The prognostic-related m6A regulators were identified, as well as the survival rate and the risk signature were established using the LASSO regression. In addition, the relationship between the prognostic-related m6A regulators and the immune cells was further explored. All the statistical analysis work was performed by the R foundation. A P<0.05 was considered statistically significant. Results:?A total of 15 m6A-regulated genes were up-regulated in PTC, and three m6A genes were down-regulated. HNRNPC and IGF2BP2 were positively and significantly correlated and ALKBH5 was negatively correlated to the lymph node metastasis of PTC. HNRNPC and IGF2BP2 were correlated to the T stage. YTHDF1 was correlated to sex. METTL14, YTHDC1, YTHDF2, and HNRNPA2B1 were correlated to the clinical stage of PTC. PTC patients with the higher expression of FTO, IGF2BP1 and YTHDF3 resulted in worse survival. YTHDF3 was correlated to the endothelial cell, the macrophage cell, NK cell and T cell CD4+; FTO was correlated to the macrophage cell, NK cell, T cell CD4+ and T cell CD8+. Conclusion:?The?m6A regulators play important role in the occurrence and development of PTC, as well as severed as potential biomarkers for PTC treatment.

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  • 收稿日期:2022-10-23
  • 最后修改日期:2022-12-01
  • 录用日期:2022-12-07
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